{
  "_id": "6a17fcc3acfb0bcc41daa73c",
  "Package": "rChEA3",
  "Title": "R Client for the 'ChEA3' Transcription Factor Enrichment API",
  "Version": "1.0.1",
  "Authors@R": "person(\"Christophe\", \"Tav\",\nemail = \"christophe.tav@gmail.com\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0001-8808-9617\"))",
  "Description": "Interface to the 'ChEA3' transcription factor enrichment\nAPI. 'ChEA3' integrates evidence from ChIP-seq, co-expression,\nand literature resources to prioritize transcription factors\nregulating a given set of genes. This package provides\nconvenient R functions to query the API, retrieve ranked\nresults across collections (including integrated scores), and\nstandardize output for downstream analysis in R/Bioconductor\nworkflows. See <https://maayanlab.cloud/chea3/> or Keenan\n(2019) <doi:10.1093/nar/gkz446> for further details.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "8.0.0",
  "URL": "https://github.com/ckntav/rChEA3, https://ckntav.github.io/rChEA3/",
  "BugReports": "https://github.com/ckntav/rChEA3/issues",
  "LazyData": "true",
  "Config/testthat/edition": "3",
  "VignetteBuilder": "knitr",
  "Config/pak/sysreqs": "libssl-dev zlib1g-dev",
  "Repository": "https://ckntav.r-universe.dev",
  "Date/Publication": "2026-05-28 04:39:02 UTC",
  "RemoteUrl": "https://github.com/ckntav/rchea3",
  "RemoteRef": "HEAD",
  "RemoteSha": "60c788137e1b944e8c3d39497ee28e8f1287ff19",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-28 08:25:27 UTC",
    "User": "root"
  },
  "Author": "Christophe Tav [aut, cre] (ORCID:\n<https://orcid.org/0000-0001-8808-9617>)",
  "Maintainer": "Christophe Tav <christophe.tav@gmail.com>",
  "MD5sum": "cf393ffae53c3ad49d2ae2a332b671e8",
  "_user": "ckntav",
  "_type": "src",
  "_file": "rChEA3_1.0.1.tar.gz",
  "_fileid": "e9519af91d9168fd14418bc15c5885e3685208845491b65d284fb96002d1f19a",
  "_filesize": 1116797,
  "_sha256": "e9519af91d9168fd14418bc15c5885e3685208845491b65d284fb96002d1f19a",
  "_created": "2026-05-28T08:25:27.000Z",
  "_published": "2026-05-28T08:28:51.296Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 78252456298,
      "time": 154,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7261198928"
    },
    {
      "job": 78252456296,
      "time": 150,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7261197935"
    },
    {
      "job": 78252456408,
      "time": 165,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7261190174"
    },
    {
      "job": 78252456256,
      "time": 138,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7261185945"
    },
    {
      "job": 78251875009,
      "time": 220,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7261145270"
    },
    {
      "job": 78252456313,
      "time": 114,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7261185405"
    },
    {
      "job": 78252456270,
      "time": 88,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7261177077"
    },
    {
      "job": 78252456285,
      "time": 79,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7261174062"
    },
    {
      "job": 78252456352,
      "time": 84,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7261175121"
    }
  ],
  "_buildurl": "https://github.com/r-universe/ckntav/actions/runs/26563409210",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/ckntav/rchea3",
  "_commit": {
    "id": "60c788137e1b944e8c3d39497ee28e8f1287ff19",
    "author": "Christophe Tav <christophe.tav@gmail.com>",
    "committer": "Christophe Tav <christophe.tav@gmail.com>",
    "message": "version consistencyls\n",
    "time": 1779943142
  },
  "_maintainer": {
    "name": "Christophe Tav",
    "email": "christophe.tav@gmail.com",
    "login": "ckntav",
    "linkedin": "in/christophe-tav",
    "orcid": "0000-0001-8808-9617",
    "twitter": "@christophe_tav",
    "description": "",
    "uuid": 36061268
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.1.0",
      "role": "Depends"
    },
    {
      "package": "cli",
      "role": "Imports"
    },
    {
      "package": "crayon",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "httr",
      "role": "Imports"
    },
    {
      "package": "jsonlite",
      "role": "Imports"
    },
    {
      "package": "lubridate",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "tidyselect",
      "role": "Imports"
    },
    {
      "package": "writexl",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "readxl",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "ckntav",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-35",
      "n": 7
    },
    {
      "week": "2025-36",
      "n": 7
    },
    {
      "week": "2025-37",
      "n": 11
    },
    {
      "week": "2025-38",
      "n": 3
    },
    {
      "week": "2025-39",
      "n": 1
    },
    {
      "week": "2025-40",
      "n": 16
    },
    {
      "week": "2025-41",
      "n": 14
    },
    {
      "week": "2025-43",
      "n": 4
    },
    {
      "week": "2025-44",
      "n": 1
    },
    {
      "week": "2026-22",
      "n": 2
    }
  ],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "ckntav",
      "count": 66,
      "uuid": 36061268
    }
  ],
  "_userbio": {
    "uuid": 36061268,
    "type": "user",
    "name": "Christophe Tav"
  },
  "_downloads": {
    "count": 147,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/rChEA3"
  },
  "_devurl": "https://github.com/ckntav/rchea3",
  "_pkgdown": "https://ckntav.github.io/rChEA3/",
  "_searchresults": 7,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/rChEA3.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/ckntav/rchea3",
  "_realowner": "ckntav",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.2.0",
      "date": "2025-10-15"
    },
    {
      "version": "1.0.1",
      "date": "2026-05-28"
    }
  ],
  "_exports": [
    "displayTopN",
    "exportResults",
    "queryChEA3",
    "saveViz",
    "today",
    "visualizeRank"
  ],
  "_datasets": [
    {
      "name": "a549_dex_downreg",
      "title": "A549 Downregulated Genes (Dex)",
      "object": "a549_dex_downreg",
      "class": [
        "character"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "a549_dex_downreg",
      "title": "A549 Downregulated Genes (Dex)",
      "topics": [
        "a549_dex_downreg"
      ]
    },
    {
      "page": "displayTopN",
      "title": "Print the top-n rows for each ChEA3 collection",
      "topics": [
        "displayTopN"
      ]
    },
    {
      "page": "exportResults",
      "title": "Export rChEA3 Results to Excel",
      "topics": [
        "exportResults"
      ]
    },
    {
      "page": "queryChEA3",
      "title": "Query ChEA3 API for TF enrichment",
      "topics": [
        "queryChEA3"
      ]
    },
    {
      "page": "saveViz",
      "title": "Save a Visualization to File (PDF, PNG, or SVG)",
      "topics": [
        "saveViz"
      ]
    },
    {
      "page": "today",
      "title": "Today's Date at Package Load Time",
      "topics": [
        "today"
      ]
    },
    {
      "page": "visualizeRank",
      "title": "Visualize top transcription factors (TFs) from ChEA3 results",
      "topics": [
        "visualizeRank"
      ]
    }
  ],
  "_readme": "https://github.com/ckntav/rchea3/raw/HEAD/README.md",
  "_rundeps": [
    "askpass",
    "cli",
    "cpp11",
    "crayon",
    "curl",
    "dplyr",
    "farver",
    "generics",
    "ggplot2",
    "glue",
    "gtable",
    "httr",
    "isoband",
    "jsonlite",
    "labeling",
    "lifecycle",
    "lubridate",
    "magrittr",
    "mime",
    "openssl",
    "pillar",
    "pkgconfig",
    "R6",
    "RColorBrewer",
    "rlang",
    "S7",
    "scales",
    "sys",
    "tibble",
    "tidyselect",
    "timechange",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr",
    "writexl"
  ],
  "_vignettes": [
    {
      "source": "rChEA3.Rmd",
      "filename": "rChEA3.html",
      "title": "rChEA3: An R client for ChEA3 transcription factor enrichment API",
      "author": "Christophe Tav",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Installation",
        "From CRAN (stable version)",
        "From GitHub (development version)",
        "Example workflow",
        "1. Submit a gene list",
        "2. Inspect top results",
        "3. Extract the result for one particular collection",
        "4. Generate the visualization",
        "Session info",
        "Citation",
        "Resources"
      ],
      "created": "2025-09-19 20:21:05",
      "modified": "2026-05-28 04:22:06",
      "commits": 7
    }
  ],
  "_score": 4.698970004336019,
  "_indexed": true,
  "_nocasepkg": "rchea3",
  "_universes": [
    "ckntav"
  ],
  "_previous": "0.2.1",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.1",
      "date": "2026-05-28T08:28:00.000Z",
      "distro": "noble",
      "commit": "60c788137e1b944e8c3d39497ee28e8f1287ff19",
      "fileid": "082436d3361a700f551077f2585121feabbb08ca4d739a767bfdf1d87b8a4088",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ckntav/actions/runs/26563409210"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.0.1",
      "date": "2026-05-28T08:27:53.000Z",
      "distro": "noble",
      "commit": "60c788137e1b944e8c3d39497ee28e8f1287ff19",
      "fileid": "575723304da510ced0770996ad4981dd4c2db1aef9c2020f6bb5c3300aa64324",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ckntav/actions/runs/26563409210"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.1",
      "date": "2026-05-28T08:27:38.000Z",
      "commit": "60c788137e1b944e8c3d39497ee28e8f1287ff19",
      "fileid": "cd51e9bd5a8dcfc70129e068f82f35836d1b4473032077bc35d12706999e3f2f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ckntav/actions/runs/26563409210"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.0.1",
      "date": "2026-05-28T08:27:26.000Z",
      "commit": "60c788137e1b944e8c3d39497ee28e8f1287ff19",
      "fileid": "858b686b23fc9038b9240df3fe8a478e1ec3672073758821b6d4a21817a3a8bc",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ckntav/actions/runs/26563409210"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.1",
      "date": "2026-05-28T08:27:41.000Z",
      "commit": "60c788137e1b944e8c3d39497ee28e8f1287ff19",
      "fileid": "782ef93cb9e6eb9935af4c21da0892d9164e59832d4ec4acd94acf7019339c1a",
      "status": "success",
      "buildurl": "https://github.com/r-universe/ckntav/actions/runs/26563409210"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.1",
      "date": "2026-05-28T08:26:52.000Z",
      "commit": "60c788137e1b944e8c3d39497ee28e8f1287ff19",
      "fileid": "3443584294fd2584e8e6541af2a5f8dcd4223026344e84a8803c39307d73f618",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ckntav/actions/runs/26563409210"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0.1",
      "date": "2026-05-28T08:26:46.000Z",
      "commit": "60c788137e1b944e8c3d39497ee28e8f1287ff19",
      "fileid": "fbf97afc94141bf9faa31260e35ec8c6d3a836186852280f005dab57c6b40eca",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ckntav/actions/runs/26563409210"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.0.1",
      "date": "2026-05-28T08:26:44.000Z",
      "commit": "60c788137e1b944e8c3d39497ee28e8f1287ff19",
      "fileid": "ca1828b912e96e3dfde74fc0d82033e92cde0f4bbfed5c66bd2a27bb12823121",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ckntav/actions/runs/26563409210"
    }
  ]
}